Index Symbols | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W Symbols --inputs gen_masks command line option --outputs gen_masks command line option -i gen_masks command line option -o gen_masks command line option A affine (kwneuro.resource.InMemoryVolumeResource attribute) apply() (kwneuro.reg.TransformResource method) array (kwneuro.resource.InMemoryBvalResource attribute) (kwneuro.resource.InMemoryBvecResource attribute) (kwneuro.resource.InMemoryVolumeResource attribute) average_volumes() (in module kwneuro.build_template) avg_signal (kwneuro.resource.InMemoryResponseFunctionResource attribute) B brain_extract_batch() (in module kwneuro.masks) brain_extract_single() (in module kwneuro.masks) build_multi_metric_template() (in module kwneuro.build_template) build_template() (in module kwneuro.build_template) bval (kwneuro.dwi.Dwi attribute) BvalResource (class in kwneuro.resource) bvec (kwneuro.dwi.Dwi attribute) BvecResource (class in kwneuro.resource) C CombatEstimates (class in kwneuro.harmonize) combine_csd_peaks_to_vector_volume() (in module kwneuro.csd) combine_response_functions() (in module kwneuro.csd) compute_csd_fods() (in module kwneuro.csd) compute_csd_peaks() (in module kwneuro.csd) compute_mean_b0() (kwneuro.dwi.Dwi method) concatenate() (kwneuro.dwi.Dwi static method) create_estimate_volume_resource() (in module kwneuro.util) D deep_equal_allclose() (in module kwneuro.util) denoise() (kwneuro.dwi.Dwi method) denoise_dwi() (in module kwneuro.denoise) directions (kwneuro.noddi.Noddi attribute) Dti (class in kwneuro.dti) Dwi (class in kwneuro.dwi) E estimate_dti() (kwneuro.dwi.Dwi method) estimate_from_dwi() (kwneuro.dti.Dti static method) (kwneuro.noddi.Noddi static method) estimate_noddi() (kwneuro.dwi.Dwi method) estimate_response_function() (in module kwneuro.csd) estimates (kwneuro.harmonize.CombatEstimates attribute) extract_brain() (kwneuro.dwi.Dwi method) extract_tractseg() (in module kwneuro.tractseg) F from_ants_image() (kwneuro.resource.InMemoryVolumeResource static method) from_dipy_object() (kwneuro.resource.InMemoryResponseFunctionResource static method) from_prolate_tensor() (kwneuro.resource.InMemoryResponseFunctionResource static method) FslBvalResource (class in kwneuro.io) FslBvecResource (class in kwneuro.io) fwf (kwneuro.noddi.Noddi property) G gen_masks command line option --inputs --outputs -i -o gen_masks() (in module kwneuro.run) get() (kwneuro.io.FslBvalResource method) (kwneuro.io.FslBvecResource method) (kwneuro.io.JsonResponseFunctionResource method) (kwneuro.resource.BvalResource method) (kwneuro.resource.BvecResource method) (kwneuro.resource.InMemoryBvalResource method) (kwneuro.resource.InMemoryBvecResource method) (kwneuro.resource.InMemoryResponseFunctionResource method) (kwneuro.resource.ResponseFunctionResource method) get_affine() (kwneuro.io.NiftiVolumeResource method) (kwneuro.resource.InMemoryVolumeResource method) (kwneuro.resource.VolumeResource method) get_array() (kwneuro.io.NiftiVolumeResource method) (kwneuro.resource.InMemoryVolumeResource method) (kwneuro.resource.VolumeResource method) get_dipy_object() (kwneuro.io.JsonResponseFunctionResource method) (kwneuro.resource.InMemoryResponseFunctionResource method) (kwneuro.resource.ResponseFunctionResource method) get_eig() (kwneuro.dti.Dti method) get_fa_md() (kwneuro.dti.Dti method) get_gtab() (kwneuro.dwi.Dwi method) get_metadata() (kwneuro.io.NiftiVolumeResource method) (kwneuro.resource.InMemoryVolumeResource method) (kwneuro.resource.VolumeResource method) get_modulated_ndi_odi() (kwneuro.noddi.Noddi method) H harmonize_volumes() (in module kwneuro.harmonize) I info (kwneuro.harmonize.CombatEstimates attribute) initialize_from_ants() (kwneuro.reg.TransformResource static method) InMemoryBvalResource (class in kwneuro.resource) InMemoryBvecResource (class in kwneuro.resource) InMemoryResponseFunctionResource (class in kwneuro.resource) InMemoryVolumeResource (class in kwneuro.resource) is_loaded (kwneuro.io.FslBvalResource attribute) (kwneuro.io.FslBvecResource attribute) (kwneuro.io.JsonResponseFunctionResource attribute) (kwneuro.io.NiftiVolumeResource attribute) (kwneuro.resource.InMemoryBvalResource attribute) (kwneuro.resource.InMemoryBvecResource attribute) (kwneuro.resource.InMemoryResponseFunctionResource attribute) (kwneuro.resource.InMemoryVolumeResource attribute) (kwneuro.resource.Resource attribute) J JsonResponseFunctionResource (class in kwneuro.io) K kwneuro module kwneuro.build_template module kwneuro.csd module kwneuro.denoise module kwneuro.dti module kwneuro.dwi module kwneuro.harmonize module kwneuro.io module kwneuro.masks module kwneuro.noddi module kwneuro.reg module kwneuro.resource module kwneuro.run module kwneuro.tractseg module kwneuro.util module L load() (kwneuro.dti.Dti method) (kwneuro.dwi.Dwi method) (kwneuro.io.FslBvalResource method) (kwneuro.io.FslBvecResource method) (kwneuro.io.JsonResponseFunctionResource method) (kwneuro.io.NiftiVolumeResource method) (kwneuro.noddi.Noddi method) (kwneuro.resource.BvalResource method) (kwneuro.resource.BvecResource method) (kwneuro.resource.InMemoryVolumeResource method) (kwneuro.resource.Resource method) (kwneuro.resource.ResponseFunctionResource method) (kwneuro.resource.VolumeResource method) M matrices (kwneuro.reg.TransformResource property) metadata (kwneuro.resource.InMemoryVolumeResource attribute) module kwneuro kwneuro.build_template kwneuro.csd kwneuro.denoise kwneuro.dti kwneuro.dwi kwneuro.harmonize kwneuro.io kwneuro.masks kwneuro.noddi kwneuro.reg kwneuro.resource kwneuro.run kwneuro.tractseg kwneuro.util N ndi (kwneuro.noddi.Noddi property) NiftiVolumeResource (class in kwneuro.io) Noddi (class in kwneuro.noddi) normalize_path() (in module kwneuro.util) O odi (kwneuro.noddi.Noddi property) P path (kwneuro.io.FslBvalResource attribute) (kwneuro.io.FslBvecResource attribute) (kwneuro.io.JsonResponseFunctionResource attribute) (kwneuro.io.NiftiVolumeResource attribute) path_in (kwneuro.io.FslBvalResource attribute) (kwneuro.io.FslBvecResource attribute) (kwneuro.io.JsonResponseFunctionResource attribute) (kwneuro.io.NiftiVolumeResource attribute) PathLike (in module kwneuro.util) R register_volumes() (in module kwneuro.reg) Resource (class in kwneuro.resource) ResponseFunctionResource (class in kwneuro.resource) S save() (kwneuro.dti.Dti method) (kwneuro.dwi.Dwi method) (kwneuro.io.FslBvalResource static method) (kwneuro.io.FslBvecResource static method) (kwneuro.io.JsonResponseFunctionResource static method) (kwneuro.io.NiftiVolumeResource static method) (kwneuro.noddi.Noddi method) (kwneuro.reg.TransformResource method) sh_coeffs (kwneuro.resource.InMemoryResponseFunctionResource attribute) T to_ants_image() (kwneuro.resource.InMemoryVolumeResource method) TransformResource (class in kwneuro.reg) U update_volume_metadata() (in module kwneuro.util) V volume (kwneuro.dti.Dti attribute) (kwneuro.dwi.Dwi attribute) (kwneuro.noddi.Noddi attribute) VolumeResource (class in kwneuro.resource) W warp_fields (kwneuro.reg.TransformResource property)